Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

Degner et al. (Tue,) studied this question.

www.synapsesocial.com/papers/69b87b6a2063235a8ad62c24 — DOI: https://doi.org/10.1093/bioinformatics/btp579

Also consider

Synapse has enriched 5 closely related papers on similar clinical questions. Consider them for comparative context:

1. NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins· 2006 · 4,666 citations
2. Minireview: GNAS: Normal and Abnormal Functions· 2004 · 326 citations
3. A haplotype map of the human genome· 2005 · 5,902 citations
4. Allelic Variation in Human Gene Expression· 2002 · 628 citations
5. Mechanisms of imprinting of the Prader–Willi/Angelman region· 2008 · 320 citations