Habitat-Adapted Endophytic Fusarium clavum EeR24 from the Arava Desert Induces Resistance Against Fusarium Wilt of Muskmelons

Muskmelon (Cucumis melo) is a widely cultivated and economically important fruit crop that is severely affected by Fusarium wilt caused by Fusarium oxysporum f. sp. melonis (race 1.2) (Fom). Conventional management practices have shown limited effectiveness and pose environmental and health risks; therefore, sustainable and eco-friendly alternatives are required to manage this disease. In the present study, 23 endophytic fungal isolates belonging to eight genera were isolated from Ecballium elaterium and screened to determine antifungal potential against Fom using an in vitro antagonistic assay. Two endophytic isolates (Fusarium sp. EeR4 and Fusarium clavum EeR24) exhibited an inhibitory effect against Fom on quarter-strength PDA plates. In growth chamber experiments, F. clavum EeR24-colonized melon seedlings and significantly protected plants from wilting compared to non-colonized pathogen-challenged seedlings. Under greenhouse conditions, F. clavum EeR24 significantly improved morphological and physiological traits, including plant height, weight, number of leaves, membrane stability, photosynthesis, stomatal conductance, and transpiration, in Cucumis melo. Endophytic colonization improved catalase (56%), guaiacol peroxide (47%), and superoxide dismutase activity (25%), and increased flavonoid and phenolic content by 11–59% compared to non-colonized Fom-challenged plants. Lipid peroxidation significantly decreased by 37% and proline accumulation increased by 70% in colonized plants compared to non-colonized plants. Histochemical analysis also indicated that endophytic colonization considerably reduced the levels of H2O2, O2−, malondialdehyde, and cell mortality in Fom-challenged plants. In addition, the culture filtrate and organic residues of F. clavum EeR24 inhibited the mycelial growth of Fom by 52–58%, respectively. Furthermore, a study on spatial colonization of the endophyte and the pathogen using GFP and RFP tagging indicated that both the endophyte and the pathogen simultaneously colonized the root tissues of C. melo; however, the endophyte significantly reduced the pathogenicity of Fom. These results suggest that endophytic F. clavum EeR24 may be developed as an effective biocontrol agent for the management of Fusarium wilt in melon plants under field conditions.