Data, code, and manuscripts for two studies: 1. "AlphaFold 3 Implicitly Learns Protein Vibrational Spectra and Resonance Constraints" — Anisotropic Network Model (ANM) normal mode analysis on 16 AlphaFold 3-predicted protein structures, demonstrating that AF3 implicitly encodes vibrational mode statistics that separate functional protein classes. 2. "Level Repulsion in Photosynthetic Complexes: A Random Matrix Biomarker for Quantum Efficiency" — First random matrix theory (RMT) level-spacing analysis of photosynthetic Hamiltonians, showing that spectral statistics correlate with quantum transport efficiency. Includes: PDB structure files, AlphaFold 3 Server fold outputs, analysis scripts (Python/ProDy), results CSV, and publication figures.
Joseph Hayden (Sat,) studied this question.