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This paper describes how to test, and potentially falsify, a multivariate causal hypothesis involving only observed variables (i.e., a path analysis) when the data have a hierarchical or multilevel structure, when different variables are potentially defined at different levels of such a hierarchy, and when different variables have different sampling distributions. The test is a generalization of Shipley's d-sep test and can be conducted using standard statistical programs capable of fitting generalized mixed models.
Bill Shipley (Sun,) studied this question.