What question did this study set out to answer?

The aim is to create a unified framework for developing and maintaining microbial genome typing tools.

April 22, 2026Open Access

camlhmp: a simple framework for building reproducible microbial genome-based typing tools

RPRobert A. Petit CRChayse M. RowleyWyoming State Department of Health TFTaylor R. FearingWyoming State Department of Health

Key Points

The aim is to create a unified framework for developing and maintaining microbial genome typing tools.
Developed camlhmp framework
Utilized human-readable YAML files for configuration
Focused on community participation in tool creation
Addresses duplication of effort in tool development
Improves consistency in typing formats
Encourages wider participation in microbial genomics

Abstract

Sequence-based typing is critical for microbial genomics, yet existing tools are often developed in isolation, leading to duplicated effort, inconsistent formats, and limited community participation. To address this, we developed camlhmp (https://github.com/rpetit3/camlhmp), a framework for creating, executing, and maintaining typing tools with simple, human-readable YAML files.

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Cite This Study

Petit et al. (Mon,) studied this question.

synapsesocial.com/papers/69e865b56e0dea528ddea20c https://doi.org/https://doi.org/10.1128/mra.00201-26

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