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September 10, 2025Academic Radiology3 citationsOpen Access

Automated Kidney Tumor Segmentation in CT Images Using Deep Learning: A Multi-Stage Approach

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HKHung-Cheng KanFGFan GaoMWMaria L. Wei

Key Points

  • The model achieved a Dice coefficient of 93.82% for kidney segmentation, enhancing clinical decision-making.
  • In renal tumor segmentation, the model reached a Dice coefficient of 88.19%, underscoring its accuracy.
  • Using a 3D convolutional neural network, this automated approach refined tumor delineation, addressing inter-observer variability.
  • Post-processing further improved segmentation results, highlighting potential for real-time application in renal oncology.

Abstract

Computed tomography (CT) remains the primary modality for assessing renal tumors; however, tumor identification and segmentation rely heavily on manual interpretation by clinicians, which is time-consuming and subject to inter-observer variability. The heterogeneity of tumor appearance and indistinct margins further complicate accurate delineation, impacting histopathological classification, treatment planning, and prognostic assessment. There is a pressing clinical need for an automated segmentation tool to enhance diagnostic workflows and support clinical decision-making with results that are reliable, accurate, and reproducible. This study developed a fully automated pipeline based on the DeepMedic 3D convolutional neural network for the segmentation of kidneys and renal tumors through multi-scale feature extraction. The model was trained and evaluated using 5-fold cross-validation on a dataset of 382 contrast-enhanced CT scans manually annotated by experienced physicians. Image preprocessing included Hounsfield unit conversion, windowing, 3D reconstruction, and voxel resampling. Post-processing was also employed to refine output masks and improve model generalizability. The proposed model achieved high performance in kidney segmentation, with an average Dice coefficient of 93.82 ± 1.38%, precision of 94.86 ± 1.59%, and recall of 93.66 ± 1.77%. In renal tumor segmentation, the model attained a Dice coefficient of 88.19 ± 1.24%, precision of 90.36 ± 1.90%, and recall of 88.23 ± 2.02%. Visual comparisons with ground truth annotations confirmed the clinical relevance and accuracy of the predictions. The proposed DeepMedic-based framework demonstrates robust, accurate segmentation of kidneys and renal tumors on CT images. With its potential for real-time application, this model could enhance diagnostic efficiency and treatment planning in renal oncology.

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Cite This Study

Kan et al. (2025) studied this question.

synapsesocial.com/papers/68c183fe9b7b07f3a06101cdhttps://doi.org/10.1016/j.acra.2025.08.020
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