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March 3, 20260 citationsOpen Access

Robust Cell-Level Classification for Liquid-Based Cervical Cytology Using Deep Transfer Learning: A Multi-Source Study Addressing Scanner-Induced Domain Shifts

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GCGulfize CoskunMAMustafa Caner AkunerEKErkan Kaplanoğlu

Key Points

  • This research aims to develop a robust framework for analyzing liquid-based cervical cytology considering scanner-induced variations.
  • Utilized deep transfer learning to classify cell images from Pap smears
  • Created a multi-source dataset from public repositories and proprietary data
  • Evaluated multiple CNN architectures (ResNet50, EfficientNetB0, VGG16) for performance
  • Categorized cell labels into four Bethesda categories (NILM, ASC-US, LSIL, HSIL)
  • Conducted systematic ablation studies to examine robustness against acquisition variability
  • ResNet50 achieved the highest accuracy of 0.91 on the independent test set
  • Using proprietary multi-center data enhanced robustness to scanner-induced variations
  • Demonstrated that diverse data sources can effectively reduce domain shifts in cytology classification

Abstract

Automated analysis of liquid-based cervical cytology is increasingly supported by digital microscopy and deep learning. However, model generalization remains challenging due to scanner- and laboratory-induced domain shifts affecting color, texture, and morphology. In this study, we present a robust cell-level classification framework for liquid-based Pap smear cytology based on deep transfer learning, designed to operate under heterogeneous acquisition conditions. We construct a multi-source dataset by integrating three widely used public reference repositories (SIPaKMeD, Herlev, CRIC Cervix) with a proprietary cohort comprising 416 Whole Slide Images (WSIs) collected from two medical centers and digitized using different scanning systems. All labels are harmonized into four Bethesda categories (NILM, ASC-US, LSIL, HSIL), and cell-centered 224 × 224 patches are used as standardized inputs for model development and benchmarking. We evaluate state-of-the-art CNN backbones (ResNet50, EfficientNetB0, VGG16) and perform systematic ablation across data-source combinations to quantify robustness under acquisition variability. Among the evaluated models, ResNet50 yields the best overall performance on the independent test set (accuracy = 0.91; macro-F1 = 0.91), consistently outperforming EfficientNetB0 and VGG16. Importantly, incorporating proprietary multi-center WSI-derived data improves robustness to scanner-induced variation compared to training on public data alone. These findings demonstrate that combining diverse data sources can mitigate domain shift in cell-level cervical cytology classification. While clinically actionable screening requires slide-level aggregation (e.g., MIL-based WSI inference), the proposed classifier provides a robust component that can be integrated into end-to-end WSI screening pipelines in future work.

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Cite This Study

Coskun et al. (2026) studied this question.

synapsesocial.com/papers/69a67ec3f353c071a6f0a3dchttps://doi.org/10.3390/bioengineering13030289
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