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March 3, 20261 citationsOpen Access

DNA-Lipid Nanodiscs with a Polyethylene Glycol Interface

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SCSoumya ChandrasekharCMChristopher MaffeoSKSanjai Karanth

Key Points

  • DNA-lipid nanodiscs successfully incorporate membrane proteins, showcasing versatility in nanoscale research.
  • Key evidence shows that methylene groups in polyethylene glycol shield hydrophobic mismatch in lipid interactions.
  • Simulations reveal functional interactions between amphiphilic polyethylene glycol and lipid acyl chains essential for stability.
  • Supports the use of atomically precise DNA scaffolds in studying complex membrane structures and dynamics.

Abstract

Abstract Nanoscale bilayer mimetics such as protein or polymer-based nanodiscs are versatile tools to study the physical chemistry of lipid bilayers or the structures and functions of membrane proteins. Here, we introduce DNA-Lipid Nanodiscs (DLNs) in which the interface between hydrophobic lipids and the charged DNA is mediated through amphiphilic poly(ethylene)glycol (PEG). For this, we modified oligonucleotides with PEG and hybridized them to a single-stranded ring to form functionalized minicircles with a well-defined diameter. The center of these minicircles can be filled with a lipid bilayer through addition of detergent-solubilized lipids followed by detergent removal. Simulations reveal that the methylene groups in PEG form dynamic interactions with the acyl chains of lipids, effectively shielding the hydrophobic mismatch. As proof of concept towards incorporation of complex membrane proteins, we inserted the biotinylated transmembrane domain of synaptobrevin into these nanodiscs and bound them to streptavidin-modified quantum dots as a marker for successful incorporation. We envision these atomically precise, modular DNA scaffolds to be widely applicable in future studies of membrane proteins and nanoscale lipid membranes. Abstract Figure

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Cite This Study

Chandrasekhar et al. (2026) studied this question.

synapsesocial.com/papers/69a7618ec6e9836116a2f947https://doi.org/10.64898/2026.02.16.705827
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