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April 21, 2026Mitochondrial DNA Part B1 citationsOpen Access

Complete chloroplast genome of the endemic species Hoya lockii (Apocynaceae) from Viet Nam

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NNNga Thi Thu NguyenCLChangyoung LeeMYManivanh Yongsa

Key Points

  • The aim is to sequence and analyze the chloroplast genome of Hoya lockii, providing insights into its evolution.
  • Annotated the chloroplast genome of Hoya lockii as a circular DNA molecule.
  • Conducted phylogenetic reconstruction using 79 protein-coding genes from 50 Apocynaceae species.
  • Analyzed genomic features including GC content, gene composition, and structural variations.
  • The chloroplast genome is 177,063 bp with a GC content of 36.9%.
  • A total of 144 genes were annotated: 98 protein-coding, 38 tRNA, and 8 rRNA genes.
  • Hoya lockii is positioned as sister to Hoya exilis with strong support (93%) in phylogenetic analysis.

Abstract

Here we report the first chloroplast genome of Hoya lockii V.T. Pham & Aver., sequenced as a circular DNA molecule (177,063 bp) comprising a large single-copy region (91,635 bp), a small single-copy region (2,242 bp), and two inverted repeats (41,593 bp), with a GC content of 36.9%. A total of 144 genes were annotated, including 98 protein-coding, 38 tRNA, and eight rRNA genes. Phylogenetic reconstruction based on 79 protein-coding genes from 50 Apocynaceae species placed H. lockii as sister to Hoya exilis with strong bootstrap support (93%). These results indicate pronounced SSC contraction and IR expansion, consistent with Hoya evolution.

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Cite This Study

Nguyen et al. (2026) studied this question.

synapsesocial.com/papers/69e7132bcb99343efc98ce9dhttps://doi.org/10.1080/23802359.2026.2658954
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