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September 5, 20250 citationsOpen Access

FeSBCP Analogue from Cyanobacteria: Insights from in vitro and in silico Studies

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ABAparna BoralTDTitir DeABAnwesha Banerjee

Key Points

  • Cyanobacterial FeSBCP exhibits efficient binding and repair of photolesions, suggesting its role in DNA repair activities.
  • In silico modeling indicates effective interactions between the FeSBCP, DNA, and its redox-active components.
  • Electrophoretic mobility shift assay supports in vitro findings of the FeSBCP's capacity for substrate binding and repair.
  • The integration of FeS clusters into FeSBCPs may enhance electron transfer mechanisms, indicating novel functionalities.

Abstract

The blue light responsive Cryptochrome/Photolyase Family harbours two important photoactivatable proteins - cryptochromes and photolyases. While cryptochromes are essentially photoreceptors with diverse biological activities including circadian rhythm, photolyases repair UV damaged cyclobutane pyrimidine dimers (CPD) or (6-4) pyrimidine-pyrimidone photoadducts. Both cryptochromes and photolyases share a common Photolyase Homology Region (PHR) where they harbour a light harvesting antenna chromophore and redox-active flavin di-nucleotide (FAD). Even though photolyases do not possess an extension in the C-terminal region unlike cryptochromes, a recent discovery of FeS cluster containing bacterial cryptochrome-photolyase proteins (FeSBCPs) present an interesting retreat from the conventional photolyase architecture. They possess an additional modular redox center, 4Fe4S iron-sulfur cluster connected by conserved cysteine residues. Herein, we characterize a cyanobacterial FeSBCP from Cyanobium sp. using tools from bioinformatics, biochemistry and biophysics. Sequence analysis reveals substitution in the well-conserved aromatic residues, meant for electron transfer. In silico modeling and docking supported by electrophoretic mobility shift assay as well as spectroscopic measurements do suggest efficient binding and repair of CyPhrB to damaged single/double-stranded substrates containing 6-4 photolesion. Considering the establised roles of FeS clusters in DNA binding/repair activities, we speculate the role of FeS clusters in FeSBCPs and existence of FeS-FAD-DNA triangle towards efficient electron transfer.

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Cite This Study

Boral et al. (2025) studied this question.

synapsesocial.com/papers/68bb46a86d6d5674bccfe4b8https://doi.org/10.1101/2025.08.30.673201
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