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April 13, 2026Open Research Europe0 citationsOpen Access

ERGA-BGE reference genome of the forest-restricted Cretan subspecies of Hanak's bat (Pipistrellus hanaki creticus), an IUCN Vulnerable species

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PGPanagiotis GeorgakakisDKDanae KarakasiPLPetros Lymberakis

Key Points

  • The aim is to provide a reference genome for the Cretan subspecies of Hanak's bat to explore its genetic characteristics.
  • Assembled a reference genome from genome sequencing data.
  • Created 23 contiguous chromosomal pseudomolecules including sex chromosomes.
  • Generated a total assembly size of 1.9 Gb composed of 447 contigs and 141 scaffolds.
  • Achieved contig N50 value of 48.7 Mb and scaffold N50 value of 89.1 Mb.
  • Created a comprehensive genomic resource that aids in assessing genetic isolation.
  • Contributed to understanding the phylogenetic history of Pipistrellus hanaki creticus.

Abstract

Hanak’s bat ( Pipistrellus hanaki Hulva and Benda 2004) is one of the most range restricted mammals in Europe, since it occurs only in Cyrenaica, Libya, and Crete (Greece). It is currently classified as ‘Vulnerable’ on the IUCN Red List, with its foraging habitat threatened by a number of human activities. The reference genome of the Cretan subspecies ( Pipistrellus hanaki creticus ) will provide a crucial resource for uncovering the species phylogenetic history and will help assess the degree of genetic isolation among the species populations. A total of 23 contiguous chromosomal pseudomolecules (sex chromosomes included) were assembled from the genome sequence. This chromosome-level assembly encompasses 1.9 Gb, composed of 447 contigs and 141 scaffolds, with contig and scaffold N50 values of 48.7 Mb and 89.1 Mb, respectively.

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Cite This Study

Georgakakis et al. (2026) studied this question.

synapsesocial.com/papers/69dc887f3afacbeac03ea49ahttps://doi.org/10.12688/openreseurope.20937.3
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