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January 25, 2026Current Issues in Molecular Biology0 citationsOpen Access

Computational Modelling and Clinical Validation of an Alzheimer’s-Related Network in Brain Cancer: The SKM034 Model

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MMMs Kristy MontalboISIzabela StasikCSChristopher George Severin Smith

Key Points

  • This research aims to explore the interactions between Alzheimer's-related SORL1 and cancer using computational models.
  • Utilized signal-flow Boolean modelling to simulate SORL1 interactions.
  • Conducted in silico knockouts to represent loss-of-function mutations.
  • Validated predictions using cell line and cancer patient RNA-seq data.
  • Predicted 29 key changes in molecular relationships due to SORL1 loss.
  • Achieved a 60% correct prediction rate, significant against random models.
  • Validated 2 predictions experimentally, with 27 identified as Potentially Novel Predictions.

Abstract

Cancer and Alzheimer’s disease (AD) display an inverse relationship, and there is a need to further explore this interplay. One key genetic contributor to AD is SORL1, the loss of which is thought to be causally related to AD development. SORL1 also appears to be implicated in cancer. To examine SORL1 and its network, this article simulated SORL1 and its interactions via signal-flow Boolean modelling, including in silico knockouts (mirroring in vivo loss-of-function mutations). This model (SKM034) predicted a total of 29 key changes in molecular relationships following the loss of SORL1 or another highly connected protein (ERBB2). Literature validation demonstrated that 2 of these predictions were at least partially validated experimentally, whilst 27 were Potentially Novel Predictions (PNPs). Complementing the in-depth relationship analyses was signal flow analysis through the network’s structure, validated using cell line and cancer patient RNA-seq data. Correct prediction rates for these analyses reached 60% (statistically significant relative to a random model). This article demonstrates the clinical relevance of this Alzheimer’s-related network in a cancer context and, through the PNPs, provides a strong starting point for in vitro experimental validation. As with previously published models using similar methods, the model may be reanalysed in different contexts for further discoveries.

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Cite This Study

Montalbo et al. (2026) studied this question.

synapsesocial.com/papers/6975b1a9feba4585c2d6d1f3https://doi.org/10.3390/cimb48020126
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