PulseExploreJournal ClubDebatesTrendingResearchersJournals
Instagram
HomeExploreJournal ClubTrending
Synapse
⌘+K
Synapse
February 2, 2026ChemPhysChem0 citationsOpen Access

Carbon‐13 Centerband‐Only Detection of EXchange with Dynamic Nuclear Polarization

View Full Paper
AVAbel Cherian VarkeyKXKai XueENEvgeny Nimerovsky

Key Points

  • The aim is to enhance the detection of protein oligomerization states using CODEX and dynamic nuclear polarization.
  • Utilized the magic-angle spinning NMR technique, CODEX, with site-specific labeling.
  • Calibrated the method using amino acid crystals and applied it to proteins with 19F labeling.
  • Implemented dynamic nuclear polarization (DNP) at low temperatures to increase sensitivity.
  • Corrected for natural abundance 13C background using a proton driven spin diffusion (PDSD) technique.
  • Showed that 13C spins can successfully determine oligomerization states when using DNP.
  • Demonstrated effective autocorrelation peak decay correction to restore the CODEX decay curve.
  • Achieved mixing times up to 1500 seconds with labeled 13C-γ-phenylalanine in a 13C-depleted background.

Abstract

The magic‐angle spinning NMR technique, Centerband‐Only Detection of EXchange (CODEX), can be used to determine the oligomerization state of molecules when combined with site‐specific labeling. Calibrated with amino acid crystals, the method is successfully applied to proteins, primarily combined with 19 F labeling. The use of 13 C spins for CODEX‐based oligomer determination in proteins is hampered by limited sensitivity of 13 C spins due to the low gyromagnetic ratio of 13 C and the presence of natural abundance background spins which contribute to the observed CODEX decay. The use of CODEX is proposed in conjunction with dynamic nuclear polarization (DNP) at low temperature to increase sensitivity. It is necessary to correct for effects of 13 C present at natural abundance. A (PDSD) proton driven spin diffusion‐based correction is demonstrated to be effective when the isotropic chemical shifts of the natural abundance background are distinct from the labeled site. Using a 13 C‐ ζ ‐phenylalanine‐labeled GB1 sample, it is demonstrated that the autocorrelation peak decay observed in a series of PDSD spectra can be utilized to correct for the additional dephasing and recover the expected CODEX decay curve. With 13 C‐ γ ‐phenylalanine labeling and 13 C‐depleted background, mixing times up to 1500 s are demonstrated.

Ask AI
Helpful
Bookmark
Share
View Full Paper

Cite This Study

Varkey et al. (2026) studied this question.

synapsesocial.com/papers/6980fed9c1c9540dea8113f2https://doi.org/10.1002/cphc.202500585
Ask AI
Helpful
Bookmark
Share
View Full Paper

Also Consider

Synapse has enriched 5 closely related papers on similar clinical questions. Consider them for comparative context:

  1. 1Magic Angle Spinning NMR of Proteins: High-Frequency Dynamic Nuclear Polarization and 1H Detection2015 · 157 citations
  2. 2Peptide and Protein Dynamics and Low-Temperature/DNP Magic Angle Spinning NMR2017 · 72 citations
  3. 3Duet of Acetate and Water at the Defects of Metal–Organic Frameworks2019 · 64 citations
  4. 4Nuclear Double Resonance in the Rotating Frame1962 · 2,228 citations
  5. 5Rotor Synchronized MAS Two‐Dimensional Exchange NMR in Solids. Principles and Applications1992 · 36 citations