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February 5, 2026Data0 citationsOpen Access

Refined IDRiD: An Enhanced Dataset for Diabetic Retinopathy Segmentation with Expert-Validated Annotations and Comprehensive Anatomical Context

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SCSakon ChankhachonSKSupaporn KansomkeatPBPatama Bhurayanontachai

Key Points

  • To improve the utility of the IDRiD dataset for diabetic retinopathy lesion segmentation by refining annotations and adding anatomical context.
  • Validation of original annotations by expert ophthalmologists
  • Correction of labeling errors for four non-proliferative lesions
  • Addition of three proliferative DR lesion annotations
  • Integration of anatomical context into the dataset
  • Systematic annotation refinement by a team of three ophthalmologists
  • Achieved inter-rater agreement F1-score of 0.9012
  • Created enhanced dataset with pixel-level annotations for seven DR lesion types and four anatomical structures
  • Cropped and resized 81 high-resolution fundus images to 1024 × 1024 pixels
  • Stored annotations as unified grayscale masks with 12 classes for efficient learning

Abstract

The Indian Diabetic Retinopathy Image Dataset (IDRiD) has been widely adopted for DR lesion segmentation research. However, it contains annotation gaps for proliferative DR lesions and labeling errors that limit its utility for comprehensive automated screening systems. We present Refined IDRiD, an enhanced version that addresses these limitations through (1) expert ophthalmologist validation and correction of labeling errors in original annotations for four non-proliferative lesions (microaneurysms, hemorrhages, hard exudates, cotton-wool spots), (2) the addition of three critical proliferative DR lesion annotations (neovascularization, vitreous hemorrhage, intraretinal microvascular abnormalities), and (3) the integration of comprehensive anatomical context (optic disc, fovea, blood vessels, retinal region). A team of three ophthalmologists (one senior specialist with >10 years’ experience, two expert fundus image annotators) conducted systematic annotation refinement, achieving an inter-rater agreement F1-score of 0.9012. The enhanced dataset comprises 81 high-resolution fundus images with pixel-level annotations for seven DR lesion types and four anatomical structures. All images were cropped to the retinal region of interest and resized to 1024 × 1024 pixels, with annotations stored as unified grayscale masks containing 12 classes enabling efficient multi-task learning. Refined IDRiD enables training of comprehensive DR screening systems capable of detecting both non-proliferative and proliferative stages while reducing false positives through anatomical context awareness.

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Cite This Study

Chankhachon et al. (2026) studied this question.

synapsesocial.com/papers/6984345ff1d9ada3c1fb2785https://doi.org/10.3390/data11020030
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