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March 5, 2026Open Life Sciences0 citationsOpen Access

Clinical pathogen profiles and lung microbiome features in lung infection patients and concurrent cancer: insights from metagenomics next-generation sequencing

DLDandan LiuYMYuehong MaQMQian Ma

Key Points

  • The research aims to compare pathogen profiles and lung microbiome features in cancer patients versus non-cancer patients with pulmonary infections.
  • Enrolled 85 patients categorized into cancer and non-cancer groups.
  • Used metagenomics next-generation sequencing (mNGS) for pathogen detection.
  • Analyzed lung microbiome characteristics focusing on diversity.
  • Compared neutrophil counts and procalcitonin levels between groups.
  • mNGS showed higher pathogen detection rates than traditional culture methods.
  • Cancer patients had elevated neutrophil counts and procalcitonin levels.
  • Fungal pathogens were significantly more common in cancer patients.
  • No significant differences in lung microbiome diversity metrics were found between groups.

Abstract

Abstract Pulmonary infections in immunocompromised cancer patients present significant diagnostic and therapeutic challenges. From Dec 2021 to Aug 2023, 85 patients with pulmonary infection were enrolled and categorized into a cancer group (CP, n = 20) and a non-cancer control group (NCP, n = 18). Pathogen detection was performed using both mNGS and culture and lung microbiome analysis was conducted. mNGS demonstrated a significantly higher pathogen detection rate than culture (P < 0.0001). The CP group exhibited older age (P < 0.001), elevated neutrophil counts (NE) and higher procalcitonin (PCT) levels compared to the NCP group. Furthermore, fungal pathogens were significantly more prevalent in the CP group (P = 0.046). Both cancer status and advanced age were independent influencing factors for the detection of pulmonary fungi. Pulmonary microbiome analysis revealed no significant differences in α -diversity or β -diversity between groups. These findings indicate that mNGS offers superior sensitivity over culture. Cancer-related pulmonary infections present a distinct pathogen profile characterized by a higher prevalence of fungal pathogens. This underscores the need for enhanced clinical vigilance, especially among elderly cancer patients.

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Cite This Study

Liu et al. (2026) studied this question.

synapsesocial.com/papers/69a91e1fd6127c7a504c1bachttps://doi.org/10.1515/biol-2025-1220
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