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March 14, 2026Scientific Data0 citationsOpen Access

A comprehensive European Colorectal Cancer Cohort dataset

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PHPetr HolubOTOuti TörnwallEÁEva G. Álvarez

Key Points

  • To create a comprehensive colorectal cancer cohort dataset for research on biomarkers and treatment outcomes.
  • Compiled clinical data from 26 biobanks across 12 European countries.
  • Collected individual-level data from 10,780 colorectal cancer patients.
  • Defined a phenotypical and clinical data model for standardized data organization.
  • Applied FAIR principles to ensure data accessibility and usability.
  • Established a curated dataset that supports ongoing research in colorectal cancer.
  • Facilitated the integration of additional data types like histopathological scans and genome sequencing.
  • Enabled pilot use cases for the European Health Data Space in cancer research.

Abstract

Colorectal cancer (CRC) is a leading cause of cancer-related deaths worldwide. The Biobanking and Biomolecular Resources European Research Infrastructure (BBMRI-ERIC) established a CRC-Cohort with European coverage contributed by 26 biobanks from 12 countries. This retrospective, multi-center study contains structured and curated clinical data, supporting research on biomarkers for early detection, prognosis, and treatment. A phenotypical/clinical data model has been defined and individual-level data from 10,780 CRC patients have been collected at BBMRI-ERIC in the central data deposition service hosted as part of its services. The participating biobanks host additional data, which can be accessed on request and used to derive additional data. This mechanism has been used to extend the collected data with scans of histopathological slides to support research in artificial intelligence in digital pathology and with whole genome sequencing data to pilot a use case of the upcoming European Health Data Space (EHDS). Here we present the methodology, the quality assurance mechanisms, and the implementation of FAIR and FAIR-Health principles applied to build the CRC-Cohort.

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Cite This Study

Holub et al. (2026) studied this question.

synapsesocial.com/papers/69b4fc33b39f7826a300ce87https://doi.org/10.1038/s41597-026-06822-2
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