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April 5, 2026Cancer Research0 citations

Abstract 6118: Spatially resolved SEED (stromal-enriched metastatic decider) niches integrate tumor, stromal, and immune ecosystems to enable lymph node dissemination in LUAD

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JOJunghan OhHJHoyeon JeongYCYoon La Choi

Key Points

  • The research aims to identify metastasis-competent SEED regions in lung adenocarcinoma and characterize their microenvironment.
  • Analyzed formalin-fixed tissues from 17 LUAD patients using 10x Genomics Xenium 5K panel.
  • Generated paired datasets from primary tumors and matched lymph-node metastases.
  • Used Seurat and SpatialData for spatial and transcriptional integration.
  • Conducted metascores and differential expression analyses with Scanpy.
  • Identified a recurrent tumor-cell cluster aligned with lymph-node profiles indicative of metastasis-competence.
  • Noted elevated metascores and enrichment in programs related to invasion and hypoxia, with HIF1A upregulation.
  • Described a spatially distinct microenvironment with POSTN-rich fibroblasts surrounding SEED clusters.
  • Observed accumulation of CXCR4-high B-cell aggregates peritumorally, while T-cell distribution remained uniform.

Abstract

Abstract Purpose: Lung adenocarcinoma (LUAD) displays substantial intratumoral heterogeneity, but the precise primary-tumor subregions that give rise to lymph-node metastasis remain unclear. We aimed to identify metastasis-competent SEED regions and characterize their microenvironmental context using paired single-cell-resolution spatial transcriptomics. Methods: Formalin-fixed tissues from 17 LUAD patients were profiled using the 10x Genomics Xenium 5K panel, generating paired datasets from primary tumors and matched lymph-node metastases. Spatial and transcriptional integration was performed using Seurat and SpatialData, and metascores and differential expression analyses were computed with Scanpy. Results: Integrated primary-lymph node analysis revealed a recurrent tumor-cell cluster whose transcriptional state aligned most closely with lymph-node profiles, representing a metastasis-competent SEED population. SEED regions showed elevated metascores and enrichment of invasion and hypoxia-associated programs, including robust HIF1A upregulation. The surrounding microenvironment was spatially distinct: fibroblasts immediately adjacent to seed clusters exhibited high POSTN expression, forming a dense stromal shell, while CXCR4-high B-cell aggregates accumulated peritumorally. In contrast, T-cell distribution remained relatively uniform across regions, indicating that SEED-associated remodeling was driven by specific stromal and B-cell interactions rather than general immune infiltration. Together, these spatially coordinated patterns delineate a niche in which HIF1A-high tumor cells interface with POSTN-rich fibroblasts and CXCR4-expressing B cells to support metastatic competence. Conclusions: Paired single-cell spatial mapping identifies discrete metastasis-prone SEED niches within LUAD primary tumors. These niches are defined by HIF1A-high tumor cells embedded in a POSTN-rich stromal compartment and surrounded by CXCR4-high B-cell aggregates. This spatial ecosystem provides a mechanistic framework for how only specific primary-tumor regions acquire the capacity for lymph-node dissemination and suggests niche-level targets for metastasis interception. Citation Format: Junghan Oh, Hoyeon Jeong, Yoon La Choi, Donggun Lee, Misook Lee. Spatially resolved SEED (stromal-enriched metastatic decider) niches integrate tumor, stromal, and immune ecosystems to enable lymph node dissemination in LUAD abstract. In: Proceedings of the American Association for Cancer Research Annual Meeting 2026; Part 1 (Regular Abstracts); 2026 Apr 17-22; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2026;86(7 Suppl):Abstract nr 6118.

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Oh et al. (2026) studied this question.

synapsesocial.com/papers/69d1fd73a79560c99a0a381ahttps://doi.org/10.1158/1538-7445.am2026-6118
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