PulseExploreJournal ClubDebatesTrendingResearchersJournals
Instagram
HomeExploreJournal ClubTrending
Synapse
⌘+K
Synapse
April 18, 2026Euphytica0 citationsOpen Access

Image-based phenotyping of castor bean seeds for morphological traits, seed weight prediction, and assessment of genetic diversity

View Full Paper
DSDiego Andrade SantosDCDiego Fernando Marmolejo CortesMSMylena Almeida dos Santos

Key Points

  • To evaluate digital phenotyping for seed characterization and its potential applications in breeding castor bean.
  • Photographed seeds from 65 and 51 accessions in 2023 and 2024, respectively, using an RGB camera.
  • Extracted morphological traits using ImageJ® with correlation and Bland–Altman analysis for measurement agreement.
  • Trained machine learning models, including Ridge Regression, to predict hundred-seed weight (HSW).
  • Explored genetic diversity using principal component analysis (PCA) and clustering.
  • Estimated variance components and heritability with mixed linear models.
  • Achieved strong agreement between digital and manual measurements (r = 0.95–0.97).
  • Ridge Regression exhibited the best performance in predicting HSW with R2 = 0.88; RMSE = 3.83; MAE = 3.19.
  • PCA explained 85.7% of the variance and identified three phenotypic clusters.
  • High heritability observed for traits like seed length (H2 = 0.88) and aspect ratio (H2 = 0.87).
  • Moderate heritability found for roundness (H2 = 0.79), perimeter (H2 = 0.72), and area (H2 = 0.67).

Abstract

Abstract Digital seed phenotyping offers an efficient and objective alternative to conventional, labor-intensive methods for morphological characterization in plant breeding programs. In castor bean, rapid and reliable tools are essential to support genetic improvement. This study evaluated the potential of digital phenotyping for seed characterization and its application in breeding. Seeds from 65 accessions (2023) and 51 accessions (2024) were photographed with an RGB camera and processed in ImageJ® for extraction of morphological traits. Agreement between digital and manual measurements was assessed by correlation and Bland–Altman analysis, while machine learning models were trained to predict hundred-seed weight (HSW). Genetic diversity was explored using principal component analysis (PCA) and clustering, and variance components and heritability were estimated with mixed linear models. Digital phenotyping showed strong agreement with manual measurements (r = 0.95–0.97) and enabled accurate HSW prediction, with Ridge Regression achieving the best performance (R 2 = 0.88; RMSE = 3.83; MAE = 3.19). PCA explained 85.7% of the variance and revealed three phenotypic clusters. Traits such as seed length (H 2 = 0.88) and aspect ratio (H 2 = 0.87) exhibited high heritability, while roundness (H 2 = 0.79), perimeter (H 2 = 0.72), and area (H 2 = 0.67) were moderate. These findings demonstrate that digital phenotyping is a reliable and high-throughput method for castor bean seed characterization, supporting genotype selection and the integration of machine learning approaches into breeding programs for greater precision and efficiency.

Ask AI
Helpful
Bookmark
Share
View Full Paper

Cite This Study

Santos et al. (2026) studied this question.

synapsesocial.com/papers/69e3201440886becb653f3c3https://doi.org/10.1007/s10681-026-03708-7
Ask AI
Helpful
Bookmark
Share
View Full Paper