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April 24, 2026The Plant Cell

A four-dimensional spatial transcriptome atlas of barley caryopsis development and germination

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Authors

MPMarta Peirats‐LlobetZŠZorana ŠtakaXYXiujuan Yang

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Overview

Randomized trial reveals gene expression dynamics in barley grain and germination, indicating vital biological processes.

Key Points

  • This research aims to generate a spatial transcriptomic atlas for barley grain development and germination to understand gene activity over time and space.
  • Utilized spatial transcriptomic analysis on serial sections of barley caryopsis.
  • Reconstructed transcript abundance across three dimensions with temporal kinetics.
  • Conducted trajectory analysis of aleurone tissue during development and germination.
  • Different gene expression patterns observed across tissues and developmental stages.
  • Heterogeneous expression detected among gene clusters with some housekeeping genes showing homogeneous patterns.
  • Identification of spatially specific transcription factors critical for seed development and germination processes.

Cite This Study

Peirats‐Llobet et al. (2026) studied this question.

synapsesocial.com/papers/69eb0cb2553a5433e34b5a9fhttps://doi.org/10.1093/plcell/koag120
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