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May 17, 20260 citationsOpen Access

Adaptive Mineral Encoding Framework (AMEF): A Thermodynamic Model of Prebiotic Symbolic Persistence

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MDMatthew Dominik

Key Points

  • This research aims to explore how stable symbolic persistence can arise in prebiotic systems through thermodynamic processes.
  • Developed a thermodynamic model using the Adaptive Mineral Encoding Framework (AMEF).
  • Evaluated metastable adsorption landscapes of greigite (Fe₃S₄) under non-equilibrium conditions.
  • Analyzed occupancy dynamics using Boltzmann-weighted sequences and statistical evaluations.
  • Identified conditions under which non-random symbolic persistence emerges in mineral systems.
  • Demonstrated the role of interaction-like coupling in maintaining metastable states.
  • Provided computational proof-of-principle for investigating symbolic persistence within prebiotic environments.

Abstract

The Adaptive Mineral Encoding Framework (AMEF) proposes a thermodynamic and information-theoretic model for the emergence of metastable symbolic persistence within prebiotic mineral systems. Rather than treating biological encoding as a purely stochastic accident of chemistry, AMEF investigates whether constrained recoverable state structure may emerge naturally within energetic systems operating far from equilibrium. The framework focuses on greigite (Fe₃S₄) -inspired metastable adsorption landscapes and evaluates whether Boltzmann-weighted occupancy dynamics combined with interaction-like coupling can generate non-random persistence behavior prior to biological inheritance systems. The implementation includes: a coupled 32-state metastable occupancy framework Boltzmann-weighted sequence generation conditional entropy analysis Zipf-Mandelbrot statistical evaluation Markovian predictive reconstruction supplementary reproducibility datasets and source code AMEF does not claim to fully explain the origin of life. Instead, it provides a computational proof-of-principle framework for investigating how metastable energetic selection may generate recoverable symbolic persistence within non-equilibrium mineral-state systems. Supplementary files include: AMEFₑncoder. py AMEF₃2stateₜable. csv greigite₃2states. npz figure panels and manuscript materials Version 1. 0 — Computational Framework Preprint.

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Cite This Study

Matthew Dominik (2026) studied this question.

synapsesocial.com/papers/6a095c2c7880e6d24efe2326https://doi.org/10.5281/zenodo.20209391
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