Molecular Epidemiology of mcr (1–5) and Other Critical Resistance Genes in Bacteria Isolated from Canine Otitis Externa in Ankara, Türkiye

Antimicrobial resistance in companion animals is a growing public health concern, yet data on last-resort resistance genes in clinical canine isolates remain scarce. This study characterizes the molecular distribution of critical resistance determinants, including mcr variants (1–5), in bacteria isolated from canine otitis externa in Ankara, Turkey. Using a combination of phenotypic disk diffusion and targeted quantitative polymerase chain reaction (qPCR), we identified Enterobacter spp., Staphylococcus spp., and Pseudomonas aeruginosa as the predominant pathogens. Notably, among Gram-negative isolates (n = 9), our results indicate preliminary evidence of mobile colistin resistance genes, particularly mcr-3 in 44.4% (4/9), and mcr-4 and mcr-5 each in 33.3% (3/9), marking the first report of these variants in canine ear infections within an urban environment. The observed notable discrepancies between genotypic carriage and phenotypic expression suggest the possible presence of silent resistance reservoirs that traditional diagnostics may overlook. These findings underscore the urgent need for molecular-integrated surveillance in veterinary clinical practice to prevent the zoonotic spread of last-resort resistance genes and to safeguard both animal and public health under the ‘One Health’ framework.