Revisiting the ‘Morita II’ Paradigm in Stevia rebaudiana: Genetic Bottlenecks, Steviol Glycoside Biology and Precision Breeding Pathways

Stevia rebaudiana Bertoni is a strategically important perennial crop because it is the main botanical source of steviol glycosides, a group of high-intensity, non-caloric sweeteners increasingly demanded by the global food and beverage industry. Despite the rapid expansion of stevia cultivation, commercial production remains strongly dependent on a narrow genetic base, particularly on clonally propagated cultivars such as ‘Morita II’, which has long served as the industrial benchmark because of its favourable rebaudioside A profile and processing consistency. This dependence has raised concerns about limited adaptive capacity, genetic erosion and restricted long-term breeding progress. In this review, we provide an integrated and critical synthesis of current knowledge on the genetic diversity of S. rebaudiana, the biosynthetic and regulatory architecture of steviol glycosides, and the conventional and emerging strategies available for crop improvement. Unlike previous reviews, this article explicitly connects domestication-driven genetic bottlenecks, wild germplasm mobilisation, metabolic pathway regulation, advanced analytical phenotyping and precision breeding into a single systems-oriented framework. We examine the roles of wild germplasm, somaclonal variation, polyploidy, molecular markers, omics-assisted approaches and transgene-free genome editing as complementary tools to broaden the stevia breeding base while preserving industrial quality standards. We finally propose an integrative roadmap for the sustainable genetic improvement of stevia, positioning ‘Morita II’ not as an endpoint, but as a benchmark within a broader diversification strategy.