Impact of Horn Traits on Yanhuang Cattle: Association with Production Performance and Genetic Characterization of Candidate Polled Alleles

Yanhuang cattle is a specialized beef breed independently developed in China with high economic value. However, the effects of the horned/polled trait on its production performance and the underlying genetic markers are poorly understood. This study aimed to evaluate the impact of horn status and to validate candidate genetic markers for the polled trait in this breed. A total of 60 Yanhuang cattle (30 horned and 30 polled) were used for comparative analysis of growth, carcass, and meat quality traits. Additionally, blood samples from 200 individuals (100 horned and 100 polled) were collected for molecular screening of seven candidate genetic markers previously associated with polledness in cattle. The polled cattle showed significantly higher body weight from 12 months onward. Body height and hip height were significantly greater at 12, 18, and 24 months, while body length displayed significant advantages at 6, 18, 24, and 30 months. Polled cattle also outperformed in chest girth (18 months), abdominal circumference (significant at 18–30 months), and ischial end width (significant at 6–12 months). Regarding slaughter traits, polled cattle exhibited higher carcass weight, along with significantly improved slaughter and net meat rates, though no differences were observed in meat quality. At the molecular level, the P202ID indel marker was successfully validated in the polled Yanhuang population. Our findings demonstrate that the polled trait is associated with superior production performance in Yanhuang cattle, and the P202ID marker represents a reliable molecular tool for polled selection, providing a theoretical and technical basis for the genetic improvement and breeding of this breed.